Results PREDIPATH

### Script output2html.py
      ### author gilles.hunault@univ-angers.fr
      
      ## this script builds a HTML5 page to interpret
      ## the results if the predipath_user_0.04.py script
      
      import sys
      import os
      import re
      import PyQt5
      import pandas  as pd
      import seaborn as sns
      
      from output2html_inc import *
      
      endif = None # to be more readable
      
      # let's print the help text if no args arge given
      
      if (len(sys.argv)==1) :
      
          aide = '''
      
          output2html.py: interpretation of the outputs of PREDIPATH script
      
          syntax:  python3 output2html.py FILE
          example: python3 output2html.py outputGenome45.txt
          '''
          print(aide)
          sys.exit()
      
      endif # fin de si
      
      # so now we are able to read the results file
      
      resFile = sys.argv[1]
      
      ## let's begin the Web page
      
      pageFileName = "output2html.html"
      
      beginPage(pageFileName)
      
      ## let's print all the file, so it will be easier to understand how to interpret the results
      
      nbc, genomeFile, genre, shortNames, longNames = writeFileInPage(resFile,pageFileName)
      
      ##  now, we have to detect and process all blocks such as
      ##
      ##  Search of specific k-mers
      ##    Classes,Kmers_per_class,Query_genome,Percent
      ##    PP,5167,5165,99.96%
      ##    NPP,1262,466,36.93%
      
      # first read the file and transfer it into a list
      
      with open(resFile) as fh :
           lines = fh.read().splitlines()
      # fin de with open
      
      # search for the beginning of the block
      # when found, explain the block
      # by the way, show file name and genus database name
      
      idl = -1
      nbl =  0 # block number
      for line in lines :
        idl += 1
        if re.search("^Search of ",line) :
           nbl += 1
           explainBlock(nbc, lines[ idl : (idl+nbc+2) ],pageFileName,nbl,genre)
      # fin de for idl
      
      ## finally, let's end the Web page
      
      endPage(pageFileName)
      
      ### end of script

A python script to explain the results of the PREDIPATH output file

Some examples of output: