Interpretation of the outputs of PREDIPATH script

Date: 07/12/19; time: 14:02.

Your text results:

    Input file:  reference/gen45-HYDgf.fasta
    Genus: Ralstonia
    
    Classes:
    NPP = Not plant-pathogenic
    PP = Plant-pathogenic
    
    Search of specific k-mers
    Classes,Kmers_per_class,Query_genome,Percent
    PP,5167,165,3.19%
    NPP,1262,1200,95.09%
    
    Search of specific genes
    Classes,Genes_per_class,Query_genome,Percent
    PP,19,1,5.26%
    NPP,1,1,100.0%

Informations

Your genome was read in the file: reference/gen45-HYDgf.fasta

You are working with genus: Ralstonia

2 classes are defined:

- class 1 short name: NPP long name: Not plant-pathogenic

- class 2 short name: PP long name: Plant-pathogenic

Explanation of results for the block: Search of specific k-mers

Class PP is defined by 5167 markers. Your query genome has 165 of these makers, which represents 3.19% of the markers.

Class NPP is defined by 1262 markers. Your query genome has 1200 of these makers, which represents 95.09% of the markers.

Therefore, your genome belongs probably to class NPP.

barplot1.png

Explanation of results for the block: Search of specific genes

Class PP is defined by 19 markers. Your query genome has 1 of these makers, which represents 5.26% of the markers.

Class NPP is defined by 1 markers. Your query genome has 1 of these makers, which represents 100.0% of the markers.

Therefore, your genome belongs probably to class NPP.

barplot2.png