Interpretation of the outputs of PREDIPATH script

Date: 07/12/19; time: 14:02.

Your text results:

    Input file: myGenome(45HUQ.fasta
    Genus: Ralstonia
    
    Classes:
    NPP = Not plant-pathogenic
    PP = Plant-pathogenic
    
    Search of specific k-mers
    Classes,Kmers_per_class,Query_genome,Percent
    PP,5167,500,9.68%
    NPP,1262,100,7.92%
    
    Search of specific genes
    Classes,Genes_per_class,Query_genome,Percent
    PP,19,5,26.32%
    NPP,1,0,0.0%

Informations

Your genome was read in the file: myGenome(45HUQ.fasta

You are working with genus: Ralstonia

2 classes are defined:

- class 1 short name: NPP long name: Not plant-pathogenic

- class 2 short name: PP long name: Plant-pathogenic

Explanation of results for the block: Search of specific k-mers

Class PP is defined by 5167 markers. Your query genome has 500 of these makers, which represents 9.68% of the markers.

Class NPP is defined by 1262 markers. Your query genome has 100 of these makers, which represents 7.92% of the markers.

Therefore, your genome is difficult to classify as belonging to class PP or NPP. We suggest to check if your genome really belongs to the genus Ralstonia..

barplot1.png

Explanation of results for the block: Search of specific genes

Class PP is defined by 19 markers. Your query genome has 5 of these makers, which represents 26.32% of the markers.

Class NPP is defined by 1 markers. Your query genome has 0 of these makers, which represents 0.0% of the markers.

Therefore, your genome is difficult to classify as belonging to class PP or NPP. We suggest to check if your genome really belongs to the genus Ralstonia..

barplot2.png