PROTpc: PROTEINS properties and counts Sequences (Fasta format) Export format           CSV (Excel) text XML (see below)              Display mode           none (quick) text HTML (slow)              Action                  In HTML output mode, you can sort a column by clicking on its header.                This will remove the sequences from the yellow input area and restore the options. Examples      LEAPdb proteins, class 12, 15 sequences, 71 to 177 aa, 12 seconds to compute.      74 Viridiplantae proteins with a WHY domain, 98 to 419 aa, 40 seconds to compute.      sHSPdb proteins, class 8 (Peroxisome), 15 sequences, 115 to 146 aa, 15 seconds to compute.      LEAPdb proteins, class 8, 92 sequences, 136 to 411 aa, 40 seconds to compute. What is computed and stored? See the help page of the LEAPdb for an explanation of the computations (with Web links). # Code Name # Code Name 1 (A) PROTID Id. of the protein 2 (B) LENGTH Number of amino acids 3 (C) PI Isoelectric point 4 (D) MW Molecular weight 5 (E) Fi FoldIndex 6 (F) GRAVY Grand average of hydropathy values 7 (G) CHARGE Mean net charge at pH 7 8 (H) HYDROPHI Mean hydrophilicity 9 (I) HYDROPHO Mean hydrophobicity <H> 10 (J) FLEXI Flexibility 11 (K) BULKI Bulkiness 12 (L) BURIED Buried 13 (M) ACCES Accres 14 (N) TRANSM Transmembr 15 (O) MW/LENGTH Molecular weight/Length 16 (P) cntA count for aminoacid A 17 (Q) cntC count for aminoacid C 18 (R) cntD count for aminoacid D 19 (S) cntE count for aminoacid E 20 (T) cntF count for aminoacid F 21 (U) cntG count for aminoacid G 22 (V) cntH count for aminoacid H 23 (W) cntI count for aminoacid I 24 (X) cntK count for aminoacid K 25 (Y) cntL count for aminoacid L 26 (Z) cntM count for aminoacid M 27 (AA) cntN count for aminoacid N 28 (AB) cntP count for aminoacid P 29 (AC) cntQ count for aminoacid Q 30 (AD) cntR count for aminoacid R 31 (AE) cntS count for aminoacid S 32 (AF) cntT count for aminoacid T 33 (AG) cntV count for aminoacid V 34 (AH) cntW count for aminoacid W 35 (AI) cntY count for aminoacid Y 36 (AJ) pctA percentage of aminoacid A 37 (AK) pctC percentage of aminoacid C 38 (AL) pctD percentage of aminoacid D 39 (AM) pctE percentage of aminoacid E 40 (AN) pctF percentage of aminoacid F 41 (AO) pctG percentage of aminoacid G 42 (AP) pctH percentage of aminoacid H 43 (AQ) pctI percentage of aminoacid I 44 (AR) pctK percentage of aminoacid K 45 (AS) pctL percentage of aminoacid L 46 (AT) pctM percentage of aminoacid M 47 (AU) pctN percentage of aminoacid N 48 (AV) pctP percentage of aminoacid P 49 (AW) pctQ percentage of aminoacid Q 50 (AX) pctR percentage of aminoacid R 51 (AY) pctS percentage of aminoacid S 52 (AZ) pctT percentage of aminoacid T 53 (BA) pctV percentage of aminoacid V 54 (BB) pctW percentage of aminoacid W 55 (BC) pctY percentage of aminoacid Y 56 (BD) pctA/Unip pct of aminoacid A / Uniprot percentage 57 (BE) pctC/Unip pct of aminoacid C / Uniprot percentage 58 (BF) pctD/Unip pct of aminoacid D / Uniprot percentage 59 (BG) pctE/Unip pct of aminoacid E / Uniprot percentage 60 (BH) pctF/Unip pct of aminoacid F / Uniprot percentage 61 (BI) pctG/Unip pct of aminoacid G / Uniprot percentage 62 (BJ) pctH/Unip pct of aminoacid H / Uniprot percentage 63 (BK) pctI/Unip pct of aminoacid I / Uniprot percentage 64 (BL) pctK/Unip pct of aminoacid K / Uniprot percentage 65 (BM) pctL/Unip pct of aminoacid L / Uniprot percentage 66 (BN) pctM/Unip pct of aminoacid M / Uniprot percentage 67 (BO) pctN/Unip pct of aminoacid N / Uniprot percentage 68 (BP) pctP/Unip pct of aminoacid P / Uniprot percentage 69 (BQ) pctQ/Unip pct of aminoacid Q / Uniprot percentage 70 (BR) pctR/Unip pct of aminoacid R / Uniprot percentage 71 (BS) pctS/Unip pct of aminoacid S / Uniprot percentage 72 (BT) pctT/Unip pct of aminoacid T / Uniprot percentage 73 (BU) pctV/Unip pct of aminoacid V / Uniprot percentage 74 (BV) pctW/Unip pct of aminoacid W / Uniprot percentage 75 (BW) pctY/Unip pct of aminoacid Y / Uniprot percentage 76 (BX) D+E combination D+E 77 (BY) K+R combination K+R 78 (BZ) D+E+K+R combination D+E+K+R 79 (CA) D+E-K-R combination D+E-K-R 80 (CB) A+I+L+V combination A+I+L+V 81 (CC) F+W+Y combination F+W+Y 82 (CD) N+Q combination N+Q 83 (CE) S+T combination S+T 84 (CF) C+W combination C+W 85 (CG) R+E+S+P combination R+E+S+P 86 (CH) C+F+Y+W combination C+F+Y+W Short example of generated CSV file: xmp.csv PROTID ; LENGTH ; PI ; MW ; FI ; GRAVY ; CHARGE ; HYDROPHI ; HYDROPHO ; FLEXI ; BULKI ; BURIED ; ACCESS ; TRANSM ; MW/LENGTH ; cntA ; cntC ; cntD ; cntE ; cntF ; cntG ; cntH ; cntI ; cntK ; cntL ; cntM ; cntN ; cntP ; cntQ ; cntR ; cntS ; cntT ; cntV ; cntW ; cntY ; pctA ; pctC ; pctD ; pctE ; pctF ; pctG ; pctH ; pctI ; pctK ; pctL ; pctM ; pctN ; pctP ; pctQ ; pctR ; pctS ; pctT ; pctV ; pctW ; pctY ; pctA/Unip ; pctC/Unip ; pctD/Unip ; pctE/Unip ; pctF/Unip ; pctG/Unip ; pctH/Unip ; pctI/Unip ; pctK/Unip ; pctL/Unip ; pctM/Unip ; pctN/Unip ; pctP/Unip ; pctQ/Unip ; pctR/Unip ; pctS/Unip ; pctT/Unip ; pctV/Unip ; pctW/Unip ; pctY/Unip ; D+E ; K+R ; D+E+K+R ; D+E-K-R ; A+I+L+V ; F+W+Y ; N+Q ; S+T ; C+W ; R+E+S+P ; C+F+Y+W XAAC49859_ ; 70 ; 7.1400 ; 7703.5500 ; -0.1988 ; -1.4229 ; 0.0014 ; 0.6671 ; -0.2724 ; 0.4633 ; 13.6543 ; 5.1000 ; 6.4986 ; -1.1719 ; 110.0507 ; 5 ; 0 ; 3 ; 9 ; 0 ; 9 ; 1 ; 0 ; 10 ; 4 ; 2 ; 1 ; 4 ; 5 ; 2 ; 3 ; 6 ; 2 ; 0 ; 4 ; 7.14286 ; 0.00000 ; 4.28571 ; 12.85714 ; 0.00000 ; 12.85714 ; 1.42857 ; 0.00000 ; 14.28571 ; 5.71429 ; 2.85714 ; 1.42857 ; 5.71429 ; 7.14286 ; 2.85714 ; 4.28571 ; 8.57143 ; 2.85714 ; 0.00000 ; 5.71429 ; 0.86371 ; 0.00000 ; 0.78637 ; 1.90194 ; 0.00000 ; 1.81342 ; 0.62933 ; 0.00000 ; 2.44200 ; 0.59093 ; 1.18064 ; 0.35273 ; 1.21840 ; 1.81752 ; 0.51666 ; 0.65732 ; 1.60815 ; 0.41589 ; 0.00000 ; 1.95695 ; 17.14286 ; 17.14286 ; 34.28571 ; 0.00000 ; 15.71429 ; 5.71429 ; 8.57143 ; 12.85714 ; 0.00000 ; 25.71429 ; 5.71429 YAAF81194 ; 82 ; 6.1300 ; 8777.7300 ; -0.1628 ; -1.2671 ; -0.0099 ; 0.4951 ; -0.1996 ; 0.4591 ; 13.4104 ; 5.4915 ; 6.6085 ; -1.0412 ; 107.0455 ; 8 ; 0 ; 3 ; 9 ; 1 ; 10 ; 2 ; 0 ; 10 ; 4 ; 1 ; 2 ; 4 ; 6 ; 1 ; 6 ; 9 ; 2 ; 0 ; 4 ; 9.75610 ; 0.00000 ; 3.65854 ; 10.97561 ; 1.21951 ; 12.19512 ; 2.43902 ; 0.00000 ; 12.19512 ; 4.87805 ; 1.21951 ; 2.43902 ; 4.87805 ; 7.31707 ; 1.21951 ; 7.31707 ; 10.97561 ; 2.43902 ; 0.00000 ; 4.87805 ; 1.17970 ; 0.00000 ; 0.67129 ; 1.62361 ; 0.31594 ; 1.72005 ; 1.07446 ; 0.00000 ; 2.08464 ; 0.50445 ; 0.50393 ; 0.60223 ; 1.04010 ; 1.86185 ; 0.22053 ; 1.12225 ; 2.05921 ; 0.35502 ; 0.00000 ; 1.67057 ; 14.63415 ; 13.41463 ; 28.04878 ; 1.21951 ; 17.07317 ; 6.09756 ; 9.75610 ; 18.29268 ; 0.00000 ; 24.39024 ; 6.09756 ZAAT99310 ; 112 ; 5.3200 ; 11911.6400 ; -0.0691 ; -0.8884 ; -0.0328 ; 0.2821 ; -0.1383 ; 0.4544 ; 13.9105 ; 5.8580 ; 5.8661 ; -0.8436 ; 106.3539 ; 14 ; 1 ; 11 ; 4 ; 0 ; 12 ; 4 ; 2 ; 4 ; 4 ; 2 ; 1 ; 9 ; 11 ; 7 ; 2 ; 12 ; 8 ; 0 ; 4 ; 12.50000 ; 0.89286 ; 9.82143 ; 3.57143 ; 0.00000 ; 10.71429 ; 3.57143 ; 1.78571 ; 3.57143 ; 3.57143 ; 1.78571 ; 0.89286 ; 8.03571 ; 9.82143 ; 6.25000 ; 1.78571 ; 10.71429 ; 7.14286 ; 0.00000 ; 3.57143 ; 1.51149 ; 0.65651 ; 1.80210 ; 0.52832 ; 0.00000 ; 1.51118 ; 1.57332 ; 0.29861 ; 0.61050 ; 0.36933 ; 0.73790 ; 0.22046 ; 1.71337 ; 2.49909 ; 1.13020 ; 0.27388 ; 2.01019 ; 1.03972 ; 0.00000 ; 1.22309 ; 13.39286 ; 9.82143 ; 23.21429 ; 3.57143 ; 25.00000 ; 3.57143 ; 10.71429 ; 12.50000 ; 0.89286 ; 19.64286 ; 4.46429 Short example of generated XML file: xmp.xml <?xml version='1.0' ?> <protpc> <protein> <PROTID>XAAC49859_</PROTID> <LENGTH> 70</LENGTH> <PI> 7.1400</PI> <MW> 7703.5500</MW> <FI> -0.1988</FI> <GRAVY> -1.4229</GRAVY> <CHARGE> 0.0014</CHARGE> <HYDROPHI> 0.6671</HYDROPHI> <HYDROPHO> -0.2724</HYDROPHO> <FLEXI> 0.4633</FLEXI> <BULKI> 13.6543</BULKI> <BURIED> 5.1000</BURIED> <ACCESS> 6.4986</ACCESS> <TRANSM> -1.1719</TRANSM> <MWdividedByLENGTH> 110.0507</MWdividedByLENGTH> <cntA> 5</cntA> <cntC> 0</cntC> <cntD> 3</cntD> <cntE> 9</cntE> <cntF> 0</cntF> <cntG> 9</cntG> <cntH> 1</cntH> <cntI> 0</cntI> <cntK> 10</cntK> <cntL> 4</cntL> <cntM> 2</cntM> <cntN> 1</cntN> <cntP> 4</cntP> <cntQ> 5</cntQ> <cntR> 2</cntR> <cntS> 3</cntS> <cntT> 6</cntT> <cntV> 2</cntV> <cntW> 0</cntW> <cntY> 4</cntY> <pctA> 7.14286</pctA> <pctC> 0.00000</pctC> <pctD> 4.28571</pctD> <pctE> 12.85714</pctE> <pctF> 0.00000</pctF> <pctG> 12.85714</pctG> <pctH> 1.42857</pctH> <pctI> 0.00000</pctI> <pctK> 14.28571</pctK> <pctL> 5.71429</pctL> <pctM> 2.85714</pctM> <pctN> 1.42857</pctN> <pctP> 5.71429</pctP> <pctQ> 7.14286</pctQ> <pctR> 2.85714</pctR> <pctS> 4.28571</pctS> <pctT> 8.57143</pctT> <pctV> 2.85714</pctV> <pctW> 0.00000</pctW> <pctY> 5.71429</pctY> <pctAdividedByUnip> 0.86371</pctAdividedByUnip> <pctCdividedByUnip> 0.00000</pctCdividedByUnip> <pctDdividedByUnip> 0.78637</pctDdividedByUnip> <pctEdividedByUnip> 1.90194</pctEdividedByUnip> <pctFdividedByUnip> 0.00000</pctFdividedByUnip> <pctGdividedByUnip> 1.81342</pctGdividedByUnip> <pctHdividedByUnip> 0.62933</pctHdividedByUnip> <pctIdividedByUnip> 0.00000</pctIdividedByUnip> <pctKdividedByUnip> 2.44200</pctKdividedByUnip> <pctLdividedByUnip> 0.59093</pctLdividedByUnip> <pctMdividedByUnip> 1.18064</pctMdividedByUnip> <pctNdividedByUnip> 0.35273</pctNdividedByUnip> <pctPdividedByUnip> 1.21840</pctPdividedByUnip> <pctQdividedByUnip> 1.81752</pctQdividedByUnip> <pctRdividedByUnip> 0.51666</pctRdividedByUnip> <pctSdividedByUnip> 0.65732</pctSdividedByUnip> <pctTdividedByUnip> 1.60815</pctTdividedByUnip> <pctVdividedByUnip> 0.41589</pctVdividedByUnip> <pctWdividedByUnip> 0.00000</pctWdividedByUnip> <pctYdividedByUnip> 1.95695</pctYdividedByUnip> <DplusE> 17.14286</DplusE> <KplusR> 17.14286</KplusR> <DplusEplusKplusR> 34.28571</DplusEplusKplusR> <DplusEminusKminusR> 0.00000</DplusEminusKminusR> <AplusIplusLplusV> 15.71429</AplusIplusLplusV> <FplusWplusY> 5.71429</FplusWplusY> <NplusQ> 8.57143</NplusQ> <SplusT> 12.85714</SplusT> <CplusW> 0.00000</CplusW> <RplusEplusSplusP> 25.71429</RplusEplusSplusP> <CplusFplusYplusW> 5.71429</CplusFplusYplusW> </protein> <protein> <PROTID>YAAF81194</PROTID> <LENGTH> 82</LENGTH> <PI> 6.1300</PI> <MW> 8777.7300</MW> <FI> -0.1628</FI> <GRAVY> -1.2671</GRAVY> <CHARGE> -0.0099</CHARGE> <HYDROPHI> 0.4951</HYDROPHI> <HYDROPHO> -0.1996</HYDROPHO> <FLEXI> 0.4591</FLEXI> <BULKI> 13.4104</BULKI> <BURIED> 5.4915</BURIED> <ACCESS> 6.6085</ACCESS> <TRANSM> -1.0412</TRANSM> <MWdividedByLENGTH> 107.0455</MWdividedByLENGTH> <cntA> 8</cntA> <cntC> 0</cntC> <cntD> 3</cntD> <cntE> 9</cntE> <cntF> 1</cntF> <cntG> 10</cntG> <cntH> 2</cntH> <cntI> 0</cntI> <cntK> 10</cntK> <cntL> 4</cntL> <cntM> 1</cntM> <cntN> 2</cntN> <cntP> 4</cntP> <cntQ> 6</cntQ> <cntR> 1</cntR> <cntS> 6</cntS> <cntT> 9</cntT> <cntV> 2</cntV> <cntW> 0</cntW> <cntY> 4</cntY> <pctA> 9.75610</pctA> <pctC> 0.00000</pctC> <pctD> 3.65854</pctD> <pctE> 10.97561</pctE> <pctF> 1.21951</pctF> <pctG> 12.19512</pctG> <pctH> 2.43902</pctH> <pctI> 0.00000</pctI> <pctK> 12.19512</pctK> <pctL> 4.87805</pctL> <pctM> 1.21951</pctM> <pctN> 2.43902</pctN> <pctP> 4.87805</pctP> <pctQ> 7.31707</pctQ> <pctR> 1.21951</pctR> <pctS> 7.31707</pctS> <pctT> 10.97561</pctT> <pctV> 2.43902</pctV> <pctW> 0.00000</pctW> <pctY> 4.87805</pctY> <pctAdividedByUnip> 1.17970</pctAdividedByUnip> <pctCdividedByUnip> 0.00000</pctCdividedByUnip> <pctDdividedByUnip> 0.67129</pctDdividedByUnip> <pctEdividedByUnip> 1.62361</pctEdividedByUnip> <pctFdividedByUnip> 0.31594</pctFdividedByUnip> <pctGdividedByUnip> 1.72005</pctGdividedByUnip> <pctHdividedByUnip> 1.07446</pctHdividedByUnip> <pctIdividedByUnip> 0.00000</pctIdividedByUnip> <pctKdividedByUnip> 2.08464</pctKdividedByUnip> <pctLdividedByUnip> 0.50445</pctLdividedByUnip> <pctMdividedByUnip> 0.50393</pctMdividedByUnip> <pctNdividedByUnip> 0.60223</pctNdividedByUnip> <pctPdividedByUnip> 1.04010</pctPdividedByUnip> <pctQdividedByUnip> 1.86185</pctQdividedByUnip> <pctRdividedByUnip> 0.22053</pctRdividedByUnip> <pctSdividedByUnip> 1.12225</pctSdividedByUnip> <pctTdividedByUnip> 2.05921</pctTdividedByUnip> <pctVdividedByUnip> 0.35502</pctVdividedByUnip> <pctWdividedByUnip> 0.00000</pctWdividedByUnip> <pctYdividedByUnip> 1.67057</pctYdividedByUnip> <DplusE> 14.63415</DplusE> <KplusR> 13.41463</KplusR> <DplusEplusKplusR> 28.04878</DplusEplusKplusR> <DplusEminusKminusR> 1.21951</DplusEminusKminusR> <AplusIplusLplusV> 17.07317</AplusIplusLplusV> <FplusWplusY> 6.09756</FplusWplusY> <NplusQ> 9.75610</NplusQ> <SplusT> 18.29268</SplusT> <CplusW> 0.00000</CplusW> <RplusEplusSplusP> 24.39024</RplusEplusSplusP> <CplusFplusYplusW> 6.09756</CplusFplusYplusW> </protein> <protein> <PROTID>ZAAT99310</PROTID> <LENGTH> 112</LENGTH> <PI> 5.3200</PI> <MW> 11911.6400</MW> <FI> -0.0691</FI> <GRAVY> -0.8884</GRAVY> <CHARGE> -0.0328</CHARGE> <HYDROPHI> 0.2821</HYDROPHI> <HYDROPHO> -0.1383</HYDROPHO> <FLEXI> 0.4544</FLEXI> <BULKI> 13.9105</BULKI> <BURIED> 5.8580</BURIED> <ACCESS> 5.8661</ACCESS> <TRANSM> -0.8436</TRANSM> <MWdividedByLENGTH> 106.3539</MWdividedByLENGTH> <cntA> 14</cntA> <cntC> 1</cntC> <cntD> 11</cntD> <cntE> 4</cntE> <cntF> 0</cntF> <cntG> 12</cntG> <cntH> 4</cntH> <cntI> 2</cntI> <cntK> 4</cntK> <cntL> 4</cntL> <cntM> 2</cntM> <cntN> 1</cntN> <cntP> 9</cntP> <cntQ> 11</cntQ> <cntR> 7</cntR> <cntS> 2</cntS> <cntT> 12</cntT> <cntV> 8</cntV> <cntW> 0</cntW> <cntY> 4</cntY> <pctA> 12.50000</pctA> <pctC> 0.89286</pctC> <pctD> 9.82143</pctD> <pctE> 3.57143</pctE> <pctF> 0.00000</pctF> <pctG> 10.71429</pctG> <pctH> 3.57143</pctH> <pctI> 1.78571</pctI> <pctK> 3.57143</pctK> <pctL> 3.57143</pctL> <pctM> 1.78571</pctM> <pctN> 0.89286</pctN> <pctP> 8.03571</pctP> <pctQ> 9.82143</pctQ> <pctR> 6.25000</pctR> <pctS> 1.78571</pctS> <pctT> 10.71429</pctT> <pctV> 7.14286</pctV> <pctW> 0.00000</pctW> <pctY> 3.57143</pctY> <pctAdividedByUnip> 1.51149</pctAdividedByUnip> <pctCdividedByUnip> 0.65651</pctCdividedByUnip> <pctDdividedByUnip> 1.80210</pctDdividedByUnip> <pctEdividedByUnip> 0.52832</pctEdividedByUnip> <pctFdividedByUnip> 0.00000</pctFdividedByUnip> <pctGdividedByUnip> 1.51118</pctGdividedByUnip> <pctHdividedByUnip> 1.57332</pctHdividedByUnip> <pctIdividedByUnip> 0.29861</pctIdividedByUnip> <pctKdividedByUnip> 0.61050</pctKdividedByUnip> <pctLdividedByUnip> 0.36933</pctLdividedByUnip> <pctMdividedByUnip> 0.73790</pctMdividedByUnip> <pctNdividedByUnip> 0.22046</pctNdividedByUnip> <pctPdividedByUnip> 1.71337</pctPdividedByUnip> <pctQdividedByUnip> 2.49909</pctQdividedByUnip> <pctRdividedByUnip> 1.13020</pctRdividedByUnip> <pctSdividedByUnip> 0.27388</pctSdividedByUnip> <pctTdividedByUnip> 2.01019</pctTdividedByUnip> <pctVdividedByUnip> 1.03972</pctVdividedByUnip> <pctWdividedByUnip> 0.00000</pctWdividedByUnip> <pctYdividedByUnip> 1.22309</pctYdividedByUnip> <DplusE> 13.39286</DplusE> <KplusR> 9.82143</KplusR> <DplusEplusKplusR> 23.21429</DplusEplusKplusR> <DplusEminusKminusR> 3.57143</DplusEminusKminusR> <AplusIplusLplusV> 25.00000</AplusIplusLplusV> <FplusWplusY> 3.57143</FplusWplusY> <NplusQ> 10.71429</NplusQ> <SplusT> 12.50000</SplusT> <CplusW> 0.89286</CplusW> <RplusEplusSplusP> 19.64286</RplusEplusSplusP> <CplusFplusYplusW> 4.46429</CplusFplusYplusW> </protein> </protpc>

 

 

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